#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00920/HGDP00920.cram --algo AlignmentStat HGDP/HGDP00920/QCmetrics/HGDP00920.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	341958899	341958899	1.000000	0	341790490	0.999508	50948895594	319935582	47883910417	45359904655	0.000000	0.006966	0.006284	0.000233	151.000000	340006979	0.994782	0	0.497453	0.021509	0.000054	
SECOND_OF_PAIR	341958899	341958899	1.000000	0	340027752	0.994353	50469726256	318189023	47439852706	44159614705	1.000000	0.011770	0.011110	0.000226	151.000000	340006979	0.999939	0	0.497471	0.021969	0.000051	
PAIR	683917798	683917798	1.000000	0	681818242	0.996930	101418621850	638124605	95323763123	89519519360	1.000000	0.009356	0.008685	0.000230	151.000000	680013958	0.997354	0	0.497462	0.021738	0.000052