#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i HGDP/HGDP00920/HGDP00920.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP00920/QCmetrics/HGDP00920.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 30.021 11.477 30 5 0 0.051493 0.0016 0.058222 0.0062471 0.01682 0.13438 0.99707 0.99233 0.98466 0.96513 0.90589 0.75623 0.5109 0.1025 0.01315 0.0062348 0.0045676 0.0035637 0.0029049 0.0024527 0.99473 23 coverage high_quality_coverage_count 0 8043902 1 3729196 2 3191429 3 3046541 4 3072353 5 3248352 6 3555861 7 4024840 8 4671613 9 5558563 10 6736241 11 8244376 12 10177842 13 12672745 14 15857601 15 19901354 16 24977609 17 31235067 18 38842000 19 47818653 20 58164973 21 69652865 22 81921156 23 94552052 24 106986182 25 118655070 26 128931766 27 137222630 28 143085106 29 146261009 30 146542840 31 143970746 32 138772811 33 131256687 34 121897008 35 111219123 36 99707351 37 87875176 38 76122050 39 64885033 40 54410386 41 44950857 42 36570270 43 29334785 44 23198862 45 18125797 46 13998441 47 10703030 48 8119858 49 6129712 50 4616699 51 3481413 52 2650052 53 2034836 54 1591999 55 1272069 56 1045018 57 877877 58 759715 59 672934 60 606043 61 556637 62 516730 63 485677 64 456943 65 432635 66 411020 67 390885 68 371881 69 353052 70 336938 71 321571 72 306021 73 292143 74 279355 75 266821 76 254742 77 243146 78 234443 79 223359 80 214615 81 206472 82 199019 83 190180 84 183211 85 176477 86 169327 87 162620 88 156825 89 151605 90 144142 91 139428 92 135153 93 129597 94 124984 95 121329 96 117001 97 113764 98 110168 99 107125 100 104201 101 101778 102 99231 103 96019 104 93537 105 91102 106 88545 107 86045 108 83920 109 81953 110 80269 111 78083 112 76094 113 74126 114 72553 115 70978 116 70023 117 68417 118 66382 119 65336 120 63705 121 62541 122 61174 123 59745 124 58444 125 57198 126 56060 127 54274 128 53976 129 52435 130 51694 131 50078 132 49201 133 47720 134 46745 135 45967 136 45024 137 43599 138 43242 139 42692 140 41621 141 41126 142 40221 143 39218 144 38668 145 37884 146 37186 147 36858 148 36055 149 35190 150 34980 151 34468 152 33662 153 33023 154 32906 155 31910 156 31770 157 30903 158 30343 159 30161 160 29276 161 29196 162 28889 163 28154 164 27691 165 27429 166 26995 167 26412 168 26085 169 25424 170 25016 171 24899 172 24139 173 23879 174 23720 175 23078 176 22823 177 22359 178 22152 179 21816 180 21272 181 21157 182 20784 183 20272 184 20217 185 19974 186 19783 187 19297 188 18979 189 18559 190 18551 191 18270 192 17995 193 17848 194 17550 195 16995 196 16830 197 16677 198 16389 199 15989 200 15857 201 15666 202 15391 203 15175 204 14992 205 14822 206 14728 207 14467 208 14309 209 14025 210 13836 211 13804 212 13699 213 13421 214 13167 215 13270 216 12899 217 12634 218 12662 219 12174 220 12063 221 11880 222 11870 223 11719 224 11555 225 11575 226 11411 227 11064 228 11237 229 11210 230 10820 231 10865 232 10796 233 10509 234 10670 235 10579 236 10133 237 10270 238 10257 239 10140 240 9880 241 9699 242 9916 243 9747 244 9631 245 9689 246 9588 247 9321 248 9344 249 9197 250 1857206