#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00929/HGDP00929.cram --algo AlignmentStat HGDP/HGDP00929/QCmetrics/HGDP00929.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	351064300	351064300	1.000000	0	350270702	0.997739	52373258250	327207104	49102289888	47381515839	0.000000	0.004812	0.004122	0.000235	151.000000	349675822	0.998302	0	0.498999	0.018463	0.002006	
SECOND_OF_PAIR	351064300	351064300	1.000000	0	349727207	0.996191	52069377205	326459011	48821390857	46396143805	0.000000	0.006541	0.005859	0.000231	151.000000	349675822	0.999853	0	0.499183	0.018899	0.001929	
PAIR	702128600	702128600	1.000000	0	699997909	0.996965	104442635455	653666115	97923680745	93777659644	0.000000	0.005674	0.004988	0.000233	151.000000	699351644	0.999077	0	0.499091	0.018681	0.001967