#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i HGDP/HGDP00929/HGDP00929.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP00929/QCmetrics/HGDP00929.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 32.235 11.889 32 5 0 0.04332 0.00056692 0.041028 0.0074909 0.015466 0.10787 0.99688 0.99269 0.98676 0.97357 0.93508 0.82919 0.62349 0.166 0.021366 0.0078012 0.0055781 0.0043161 0.0034758 0.0028687 0.99488 23 coverage high_quality_coverage_count 0 8561538 1 3426661 2 2829059 3 2651186 4 2626137 5 2703191 6 2862757 7 3129511 8 3521045 9 4062675 10 4775621 11 5696152 12 6904746 13 8457462 14 10432447 15 12942956 16 16128252 17 20154146 18 25182879 19 31346638 20 38739687 21 47381054 22 57218187 23 68042918 24 79595149 25 91457334 26 103192281 27 114243621 28 124106126 29 132253531 30 138262326 31 141813288 32 142764860 33 141060573 34 136868913 35 130406954 36 122032222 37 112253358 38 101501674 39 90215507 40 78903861 41 67892932 42 57514227 43 47977009 44 39454584 45 31974224 46 25565795 47 20196169 48 15774113 49 12193917 50 9344328 51 7116826 52 5411222 53 4115453 54 3146359 55 2430305 56 1904402 57 1522538 58 1245179 59 1039972 60 893996 61 784928 62 704521 63 643848 64 595752 65 556515 66 522878 67 493353 68 468783 69 444220 70 423590 71 403102 72 385298 73 368376 74 351599 75 335756 76 320631 77 306215 78 292440 79 281113 80 269987 81 260238 82 250511 83 241440 84 233052 85 224639 86 216975 87 211295 88 203363 89 197441 90 191263 91 185397 92 179409 93 174704 94 168433 95 164069 96 158728 97 153820 98 148786 99 143735 100 140803 101 135237 102 131016 103 126744 104 123649 105 119853 106 116692 107 112250 108 108860 109 106446 110 102313 111 99182 112 96790 113 94037 114 91227 115 88244 116 86195 117 83916 118 81232 119 80323 120 78167 121 76171 122 74179 123 72772 124 70493 125 69159 126 67921 127 66677 128 65182 129 63871 130 62200 131 60927 132 59530 133 57937 134 56501 135 55541 136 54829 137 53307 138 52431 139 51127 140 50467 141 49313 142 48603 143 47400 144 46980 145 45763 146 45137 147 44242 148 43065 149 42524 150 41522 151 40829 152 39716 153 39364 154 37860 155 37167 156 36703 157 36224 158 35394 159 34550 160 33886 161 33586 162 33176 163 32336 164 31639 165 31246 166 30169 167 30269 168 29604 169 28941 170 28613 171 28024 172 27497 173 27035 174 26857 175 26556 176 26043 177 25550 178 25205 179 25078 180 24651 181 24409 182 24095 183 23910 184 23397 185 22956 186 22853 187 22743 188 22107 189 22143 190 21849 191 21670 192 21513 193 21112 194 20977 195 20714 196 20064 197 20316 198 20285 199 19714 200 19622 201 19529 202 18983 203 19239 204 18662 205 18634 206 18402 207 18030 208 17832 209 17972 210 17641 211 17124 212 17059 213 17023 214 16827 215 16570 216 16211 217 16075 218 16081 219 15719 220 15370 221 15240 222 15109 223 14915 224 14571 225 14414 226 14388 227 14029 228 13760 229 13735 230 13613 231 13088 232 12945 233 12843 234 12523 235 12555 236 12279 237 12102 238 11810 239 12006 240 11646 241 11073 242 11097 243 10854 244 10722 245 10606 246 10518 247 10206 248 10062 249 9958 250 1892334