#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i HGDP/HGDP00929/HGDP00929.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP00929/QCmetrics/HGDP00929.WgsMetrics.chrY.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 23636355 18.714 24.313 15 3 0 0.073196 0.00091363 0.044563 0.0082286 0.35124 0.47814 0.99396 0.98003 0.88826 0.56605 0.2124 0.072311 0.043683 0.031976 0.02597 0.02204 0.019197 0.016973 0.015164 0.013789 0.98283 18 coverage high_quality_coverage_count 0 142799 1 60402 2 64902 3 86030 4 117793 5 173761 6 262061 7 387280 8 560415 9 785703 10 1049704 11 1322150 12 1572137 13 1773325 14 1898487 15 1934109 16 1872425 17 1725934 18 1530532 19 1296058 20 1055729 21 831116 22 628014 23 462905 24 333426 25 237822 26 167870 27 119850 28 86831 29 64271 30 49499 31 39586 32 33564 33 28452 34 25277 35 22954 36 21240 37 19949 38 18483 39 17721 40 17344 41 16908 42 15954 43 15286 44 14357 45 13513 46 13028 47 12483 48 11738 49 11353 50 10923 51 10563 52 9970 53 9613 54 9181 55 8879 56 8807 57 8515 58 8379 59 8058 60 7726 61 7458 62 7184 63 6960 64 6820 65 6728 66 6317 67 6179 68 5946 69 5872 70 5676 71 5643 72 5566 73 5506 74 5378 75 5179 76 5121 77 5057 78 4810 79 4642 80 4572 81 4537 82 4438 83 4462 84 4299 85 4267 86 4137 87 4098 88 4041 89 3898 90 3669 91 3571 92 3534 93 3338 94 3298 95 3130 96 3095 97 2984 98 2962 99 2910 100 2774 101 2883 102 2668 103 2559 104 2604 105 2563 106 2348 107 2259 108 2241 109 2207 110 2046 111 1951 112 1948 113 1965 114 1877 115 1843 116 1704 117 1770 118 1699 119 1636 120 1622 121 1587 122 1610 123 1577 124 1574 125 1580 126 1479 127 1505 128 1523 129 1455 130 1404 131 1409 132 1367 133 1272 134 1277 135 1374 136 1282 137 1320 138 1293 139 1316 140 1271 141 1239 142 1251 143 1264 144 1299 145 1323 146 1253 147 1210 148 1293 149 1186 150 1255 151 1272 152 1233 153 1136 154 1123 155 1212 156 1195 157 1165 158 1125 159 1076 160 1073 161 1064 162 1115 163 1041 164 1086 165 1003 166 1021 167 948 168 1069 169 952 170 978 171 983 172 965 173 975 174 888 175 960 176 895 177 839 178 857 179 856 180 846 181 812 182 788 183 766 184 766 185 734 186 697 187 674 188 664 189 681 190 696 191 652 192 652 193 603 194 592 195 616 196 639 197 629 198 601 199 581 200 631 201 537 202 534 203 524 204 505 205 563 206 495 207 537 208 527 209 519 210 512 211 487 212 498 213 493 214 504 215 513 216 461 217 502 218 441 219 418 220 442 221 462 222 418 223 443 224 426 225 467 226 463 227 492 228 466 229 417 230 435 231 412 232 419 233 421 234 431 235 439 236 369 237 382 238 422 239 415 240 370 241 359 242 379 243 359 244 388 245 366 246 363 247 355 248 348 249 352 250 173439