#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00933/HGDP00933.cram --algo AlignmentStat HGDP/HGDP00933/QCmetrics/HGDP00933.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	368431982	368431982	1.000000	0	368301208	0.999645	55062109334	345417854	51817764354	50070895840	0.000000	0.004865	0.004223	0.000234	151.000000	367397007	0.997545	0	0.499052	0.017961	0.000062	
SECOND_OF_PAIR	368431982	368431982	1.000000	0	367416275	0.997243	52620712397	344204048	49512372283	46808083597	0.000000	0.014749	0.014195	0.000219	151.000000	367397007	0.999948	0	0.499202	0.018251	0.000059	
PAIR	736863964	736863964	1.000000	0	735717483	0.998444	107682821731	689621902	101330136637	96878979437	0.000000	0.009695	0.009095	0.000227	151.000000	734794014	0.998745	0	0.499127	0.018105	0.000060