#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i HGDP/HGDP00933/HGDP00933.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP00933/QCmetrics/HGDP00933.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 32.198 11.619 32 5 0 0.053615 0.00094832 0.042149 0.008093 0.016441 0.12125 0.99694 0.9926 0.98671 0.97425 0.9395 0.84039 0.6328 0.15459 0.017763 0.0070826 0.0050874 0.0039264 0.0031709 0.0026467 0.99492 23 coverage high_quality_coverage_count 0 8414021 1 3595304 2 2938038 3 2722784 4 2677277 5 2730764 6 2877642 7 3118993 8 3474051 9 3969918 10 4635577 11 5474615 12 6556053 13 7924713 14 9644051 15 11841997 16 14627800 17 18151217 18 22632343 19 28235503 20 35112774 21 43418961 22 53167614 23 64234952 24 76434838 25 89363354 26 102462576 27 115187664 28 126778819 29 136656666 30 144189762 31 148903827 32 150555978 33 149016074 34 144427536 35 137130815 36 127629510 37 116470499 38 104230557 39 91543402 40 78897278 41 66791263 42 55596780 43 45490115 44 36621348 45 29042820 46 22684109 47 17488411 48 13326772 49 10055387 50 7533193 51 5625790 52 4209061 53 3162115 54 2406448 55 1863015 56 1476980 57 1203043 58 1005742 59 864016 60 759643 61 681829 62 623786 63 579306 64 540654 65 509154 66 481800 67 456991 68 435933 69 413834 70 393008 71 372794 72 355496 73 338595 74 322745 75 308094 76 294254 77 281316 78 268187 79 255824 80 246618 81 236521 82 225927 83 218381 84 210212 85 202429 86 193530 87 188075 88 180148 89 174230 90 167624 91 160898 92 156090 93 151031 94 145764 95 141203 96 136261 97 131603 98 126937 99 123089 100 118993 101 114456 102 111239 103 108022 104 105215 105 101995 106 99245 107 96002 108 93464 109 90836 110 88349 111 85714 112 83705 113 80870 114 78721 115 76734 116 74136 117 72134 118 70126 119 68508 120 67011 121 65369 122 63976 123 62369 124 61033 125 59795 126 58158 127 57166 128 55956 129 54836 130 54017 131 52260 132 50588 133 49667 134 48377 135 47693 136 46491 137 45399 138 44928 139 43654 140 42823 141 42305 142 41574 143 40941 144 40302 145 39622 146 38584 147 38523 148 37750 149 36687 150 36520 151 35589 152 35054 153 34409 154 33905 155 33591 156 32747 157 31882 158 31628 159 31250 160 30764 161 30242 162 29731 163 29642 164 29292 165 29114 166 28739 167 28091 168 27728 169 27416 170 27233 171 26511 172 26107 173 25810 174 25403 175 25232 176 24915 177 24616 178 24143 179 23899 180 23462 181 23365 182 22763 183 22491 184 22135 185 21924 186 21506 187 21307 188 20781 189 20930 190 20672 191 19856 192 19766 193 19608 194 19238 195 19140 196 19012 197 18740 198 18558 199 18261 200 18049 201 17585 202 17495 203 17363 204 17254 205 17032 206 16702 207 16424 208 16671 209 16281 210 16188 211 15760 212 15597 213 15423 214 15298 215 15062 216 14761 217 14656 218 14503 219 14015 220 13835 221 13756 222 13472 223 13372 224 13391 225 13164 226 12810 227 12820 228 12643 229 12570 230 12703 231 12491 232 12435 233 12098 234 12007 235 11838 236 11851 237 11770 238 11551 239 11420 240 11416 241 11303 242 11060 243 11090 244 10868 245 10686 246 10642 247 10472 248 10425 249 10235 250 1989696