#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00935/HGDP00935.cram --algo AlignmentStat HGDP/HGDP00935/QCmetrics/HGDP00935.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	380473739	380473739	1.000000	0	380285080	0.999504	56891268720	357736854	53706334528	52040986045	0.000000	0.004516	0.003890	0.000235	151.000000	379429989	0.997751	0	0.499370	0.017298	0.000281	
SECOND_OF_PAIR	380473739	380473739	1.000000	0	379456108	0.997325	56571685798	356739054	53405574193	51027120819	0.000000	0.005979	0.005358	0.000229	151.000000	379429989	0.999931	0	0.499434	0.017852	0.000266	
PAIR	760947478	760947478	1.000000	0	759741188	0.998415	113462954518	714475908	107111908721	103068106864	0.000000	0.005245	0.004622	0.000232	151.000000	758859978	0.998840	0	0.499402	0.017575	0.000273