#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i HGDP/HGDP00935/HGDP00935.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP00935/QCmetrics/HGDP00935.WgsMetrics.chrY.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 23636355 2.1022 17.237 0 0 0 0.05375 0.0042723 0.054092 0.013406 0.46051 0.58603 0.11351 0.042712 0.026589 0.020127 0.016836 0.014734 0.013247 0.011226 0.0099457 0.0089636 0.0082291 0.0076464 0.0071321 0.0066811 0.07924 0 coverage high_quality_coverage_count 0 20953417 1 996207 2 323003 3 204787 4 149390 5 114272 6 88106 7 70407 8 59165 9 49137 10 41654 11 34077 12 29638 13 25591 14 21784 15 19398 16 16874 17 15084 18 13783 19 12642 20 11752 21 10823 22 9926 23 8817 24 8370 25 7858 26 7179 27 6937 28 6567 29 6589 30 6270 31 5968 32 5577 33 5225 34 4995 35 4311 36 4146 37 3975 38 3750 39 3555 40 3502 41 3481 42 3241 43 3260 44 2987 45 2886 46 2823 47 2788 48 2693 49 2609 50 2637 51 2430 52 2448 53 2405 54 2418 55 2327 56 2317 57 2105 58 2082 59 2042 60 2039 61 1881 62 1794 63 1796 64 1708 65 1744 66 1619 67 1695 68 1568 69 1519 70 1512 71 1498 72 1505 73 1428 74 1406 75 1390 76 1247 77 1242 78 1281 79 1263 80 1235 81 1227 82 1268 83 1229 84 1286 85 1251 86 1214 87 1154 88 1198 89 1095 90 1136 91 1073 92 1140 93 1102 94 1069 95 1048 96 998 97 1022 98 1043 99 1029 100 989 101 1050 102 1006 103 982 104 958 105 1042 106 975 107 1008 108 1032 109 981 110 937 111 928 112 902 113 934 114 926 115 926 116 985 117 937 118 964 119 1021 120 969 121 997 122 997 123 1022 124 982 125 925 126 955 127 968 128 971 129 921 130 958 131 985 132 987 133 917 134 897 135 872 136 911 137 875 138 899 139 848 140 866 141 949 142 931 143 962 144 895 145 846 146 905 147 847 148 900 149 820 150 849 151 855 152 775 153 746 154 701 155 684 156 668 157 637 158 633 159 603 160 608 161 637 162 613 163 621 164 568 165 623 166 576 167 648 168 635 169 571 170 601 171 607 172 605 173 581 174 584 175 589 176 614 177 613 178 578 179 595 180 560 181 600 182 576 183 632 184 627 185 600 186 593 187 567 188 554 189 537 190 522 191 532 192 519 193 564 194 522 195 477 196 496 197 444 198 451 199 447 200 436 201 419 202 383 203 389 204 406 205 378 206 383 207 351 208 323 209 347 210 354 211 281 212 276 213 303 214 298 215 265 216 271 217 280 218 254 219 267 220 252 221 257 222 258 223 249 224 251 225 249 226 250 227 227 228 269 229 241 230 263 231 251 232 263 233 224 234 251 235 259 236 207 237 213 238 212 239 216 240 209 241 224 242 223 243 219 244 220 245 192 246 204 247 180 248 195 249 210 250 67016