#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00939/HGDP00939.cram --algo AlignmentStat HGDP/HGDP00939/QCmetrics/HGDP00939.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	374074492	374074492	1.000000	0	373591332	0.998708	55806897665	348191323	52231677955	50129530923	0.000000	0.005960	0.005104	0.000249	151.000000	370898178	0.992791	0	0.491039	0.029123	0.000981	
SECOND_OF_PAIR	374074492	374074492	1.000000	0	370936316	0.991611	54410019888	345798380	50994032562	47843888860	0.000000	0.016869	0.016140	0.000243	151.000000	370898178	0.999897	0	0.494537	0.029490	0.000941	
PAIR	748148984	748148984	1.000000	0	744527648	0.995160	110216917553	693989703	103225710517	97973419783	0.000000	0.011345	0.010556	0.000246	151.000000	741796356	0.996332	0	0.492782	0.029306	0.000961