#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00940/HGDP00940.cram --algo AlignmentStat HGDP/HGDP00940/QCmetrics/HGDP00940.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	387786509	387786509	1.000000	0	387278218	0.998689	57936962763	360544769	54124902673	52121958278	0.000000	0.004901	0.004139	0.000238	151.000000	377497784	0.974746	0	0.492045	0.028132	0.001097	
SECOND_OF_PAIR	387786509	387786509	1.000000	0	377538765	0.973574	55867293448	351075265	52244730874	49478493953	0.000000	0.007207	0.006436	0.000238	151.000000	377497784	0.999891	0	0.494383	0.029143	0.001026	
PAIR	775573018	775573018	1.000000	0	764816983	0.986131	113804256211	711620034	106369633547	101600452231	0.000000	0.006033	0.005267	0.000238	151.000000	754995568	0.987158	0	0.493200	0.028632	0.001062