#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrX.interval_list -i HGDP/HGDP00940/HGDP00940.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP00940/QCmetrics/HGDP00940.WgsMetrics.chrX.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 152114341 16.512 6.4075 16 3 0 0.03909 0.010252 0.041994 0.0090901 0.00018881 0.10061 0.9935 0.98078 0.91585 0.64443 0.26302 0.061607 0.013171 0.0038245 0.0020674 0.0012936 0.00090514 0.00066773 0.00052096 0.00041147 0.98432 18 coverage high_quality_coverage_count 0 988481 1 469570 2 432296 3 467389 4 565695 5 777604 6 1144086 7 1718841 8 2553593 9 3683400 10 5100180 11 6704953 12 8360127 13 9921782 14 11199119 15 12030751 16 12316604 17 12071948 18 11360919 19 10238044 20 8890524 21 7442238 22 6022590 23 4712162 24 3570194 25 2628375 26 1885706 27 1322567 28 910981 29 620192 30 416655 31 281579 32 193624 33 138638 34 102445 35 80044 36 64995 37 54281 38 47454 39 41947 40 37847 41 34214 42 31553 43 29002 44 27224 45 25036 46 23344 47 21083 48 19793 49 18191 50 16566 51 15182 52 14149 53 12998 54 12142 55 10901 56 9991 57 8992 58 8620 59 8160 60 7697 61 7113 62 6764 63 6446 64 5880 65 5635 66 5289 67 4797 68 4788 69 4686 70 4595 71 4310 72 4066 73 3910 74 3631 75 3403 76 3298 77 3172 78 2953 79 2776 80 2544 81 2500 82 2338 83 2249 84 2237 85 2192 86 2186 87 2102 88 2045 89 1932 90 1845 91 1904 92 1786 93 1714 94 1687 95 1619 96 1577 97 1533 98 1513 99 1477 100 1503 101 1485 102 1451 103 1439 104 1387 105 1355 106 1344 107 1372 108 1245 109 1377 110 1188 111 1231 112 1220 113 1156 114 1135 115 1068 116 1036 117 958 118 889 119 857 120 841 121 848 122 792 123 816 124 823 125 745 126 730 127 627 128 646 129 650 130 633 131 636 132 630 133 577 134 594 135 533 136 562 137 494 138 447 139 495 140 439 141 456 142 425 143 446 144 400 145 421 146 380 147 411 148 383 149 379 150 429 151 330 152 344 153 356 154 365 155 335 156 342 157 310 158 303 159 273 160 289 161 260 162 242 163 253 164 266 165 232 166 237 167 213 168 244 169 219 170 219 171 205 172 230 173 200 174 225 175 206 176 220 177 223 178 202 179 230 180 242 181 225 182 205 183 203 184 203 185 200 186 206 187 172 188 153 189 161 190 166 191 145 192 168 193 167 194 128 195 161 196 145 197 144 198 129 199 143 200 131 201 121 202 123 203 105 204 122 205 105 206 112 207 134 208 117 209 107 210 97 211 96 212 106 213 120 214 126 215 108 216 91 217 75 218 97 219 103 220 91 221 90 222 90 223 93 224 67 225 94 226 69 227 79 228 84 229 88 230 70 231 78 232 87 233 68 234 75 235 64 236 78 237 58 238 69 239 78 240 67 241 63 242 63 243 67 244 56 245 61 246 66 247 65 248 53 249 61 250 4780