#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i HGDP/HGDP00940/HGDP00940.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP00940/QCmetrics/HGDP00940.WgsMetrics.chrY.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 23636355 20.284 25.123 16 3 0 0.046245 0.010454 0.046064 0.010284 0.24409 0.35714 0.99419 0.98257 0.91548 0.65199 0.28569 0.097947 0.051506 0.037796 0.033049 0.029541 0.026233 0.022783 0.019341 0.0164 0.98534 18 coverage high_quality_coverage_count 0 137272 1 56116 2 55860 3 70600 4 92055 5 133290 6 192062 7 278701 8 405394 9 576316 10 778396 11 1015151 12 1259910 13 1491149 14 1683317 15 1803364 16 1846360 17 1804514 18 1688800 19 1515051 20 1302410 21 1081808 22 867343 23 674009 24 512007 25 379595 26 276069 27 198610 28 141960 29 101462 30 73649 31 53873 32 41581 33 33154 34 27247 35 23337 36 20506 37 18373 38 16865 39 15463 40 14054 41 13046 42 12348 43 11703 44 11118 45 10852 46 10286 47 9759 48 9770 49 9269 50 9029 51 8828 52 8671 53 8292 54 8348 55 8072 56 7927 57 7941 58 7994 59 7806 60 8062 61 7963 62 7894 63 8095 64 7834 65 7825 66 7720 67 7745 68 7466 69 7594 70 7735 71 7931 72 8135 73 8132 74 8038 75 8227 76 8258 77 8296 78 8322 79 8466 80 8530 81 8375 82 8621 83 8406 84 8224 85 8022 86 7932 87 7903 88 7764 89 7581 90 7688 91 7555 92 7445 93 7328 94 6919 95 6863 96 6870 97 6599 98 6217 99 6020 100 5855 101 5772 102 5739 103 5386 104 5424 105 5277 106 5113 107 4870 108 4750 109 4492 110 4267 111 4115 112 3865 113 3624 114 3500 115 3411 116 3211 117 3011 118 2968 119 2859 120 2773 121 2642 122 2531 123 2370 124 2291 125 2224 126 2100 127 2029 128 1900 129 1837 130 1811 131 1637 132 1633 133 1587 134 1616 135 1523 136 1464 137 1519 138 1444 139 1403 140 1342 141 1302 142 1319 143 1232 144 1215 145 1128 146 1284 147 1196 148 1227 149 1223 150 1172 151 1153 152 1077 153 1147 154 1089 155 1079 156 1094 157 1093 158 1036 159 1085 160 1125 161 1095 162 1077 163 1061 164 1094 165 1144 166 1098 167 1125 168 1039 169 1061 170 1100 171 1123 172 1054 173 1036 174 1033 175 1016 176 988 177 1068 178 1036 179 995 180 1001 181 994 182 984 183 954 184 945 185 960 186 881 187 898 188 946 189 919 190 935 191 926 192 900 193 881 194 916 195 911 196 835 197 908 198 935 199 903 200 831 201 899 202 872 203 915 204 836 205 826 206 805 207 816 208 734 209 702 210 750 211 769 212 712 213 719 214 658 215 672 216 632 217 695 218 690 219 692 220 627 221 647 222 627 223 565 224 547 225 522 226 597 227 528 228 518 229 524 230 495 231 512 232 544 233 518 234 543 235 538 236 509 237 531 238 504 239 539 240 493 241 515 242 541 243 471 244 485 245 524 246 460 247 503 248 467 249 516 250 167272