#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00941/HGDP00941.cram --algo AlignmentStat HGDP/HGDP00941/QCmetrics/HGDP00941.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	397380219	397380219	1.000000	0	397042817	0.999151	59397103609	369780316	55519093168	53681500200	0.000000	0.004836	0.004039	0.000241	151.000000	395555972	0.996255	0	0.492384	0.029482	0.000671	
SECOND_OF_PAIR	397380219	397380219	1.000000	0	395590820	0.995497	58774409585	367984023	54921514057	52520077562	0.000000	0.006099	0.005272	0.000242	151.000000	395555972	0.999912	0	0.493891	0.030023	0.000646	
PAIR	794760438	794760438	1.000000	0	792633637	0.997324	118171513194	737764339	110440607225	106201577762	0.000000	0.005464	0.004653	0.000242	151.000000	791111944	0.998080	0	0.493136	0.029752	0.000659