#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i HGDP/HGDP00941/HGDP00941.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP00941/QCmetrics/HGDP00941.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 35.898 12.889 36 6 0 0.065042 0.00042995 0.036184 0.0070624 0.016159 0.12488 0.99709 0.9931 0.98803 0.97862 0.95538 0.89455 0.76091 0.32402 0.059661 0.011507 0.0067616 0.0051669 0.0041394 0.0034374 0.99522 23 coverage high_quality_coverage_count 0 8000640 1 3383878 2 2690149 3 2476266 4 2416424 5 2464364 6 2554174 7 2707469 8 2940525 9 3267259 10 3698167 11 4261234 12 4987550 13 5883412 14 7021088 15 8413186 16 10126624 17 12256386 18 14895530 19 18158044 20 22125862 21 26897083 22 32524112 23 39074929 24 46549855 25 54834849 26 63798858 27 73245964 28 82918052 29 92450208 30 101527891 31 109751022 32 116797444 33 122379520 34 126242585 35 128267687 36 128350308 37 126553652 38 122947325 39 117722192 40 111106054 41 103392951 42 94847966 43 85802798 44 76569554 45 67450120 46 58654413 47 50323875 48 42630934 49 35678619 50 29503445 51 24088901 52 19474823 53 15582693 54 12346417 55 9712767 56 7589241 57 5898541 58 4574879 59 3553032 60 2770935 61 2179781 62 1733696 63 1402234 64 1154408 65 971169 66 834366 67 735223 68 658399 69 600815 70 557381 71 521524 72 488092 73 462057 74 438962 75 418302 76 399081 77 381962 78 365050 79 349699 80 335582 81 323190 82 308918 83 298669 84 286644 85 275212 86 264372 87 253951 88 242769 89 234165 90 225998 91 217309 92 209146 93 202445 94 195099 95 188049 96 181690 97 174853 98 169725 99 164803 100 159021 101 153926 102 149522 103 144357 104 139620 105 136410 106 131551 107 128665 108 124421 109 120423 110 117538 111 113980 112 111782 113 108321 114 105868 115 103155 116 99885 117 97583 118 95895 119 92676 120 90161 121 88437 122 86483 123 84583 124 83187 125 80989 126 79225 127 77618 128 76477 129 74540 130 73563 131 72061 132 70869 133 69572 134 67876 135 67082 136 65381 137 65053 138 63261 139 62215 140 61010 141 59688 142 58697 143 57471 144 56492 145 55304 146 54728 147 53638 148 53161 149 51672 150 50686 151 50193 152 49268 153 48139 154 47500 155 46850 156 45923 157 45354 158 44847 159 43968 160 43231 161 42741 162 42203 163 41397 164 40793 165 40346 166 39750 167 38949 168 38952 169 38431 170 37975 171 37585 172 37145 173 36945 174 35962 175 35940 176 34889 177 34473 178 34251 179 33258 180 33219 181 32637 182 32209 183 31821 184 31145 185 31174 186 30258 187 29715 188 29327 189 29015 190 28409 191 28121 192 27956 193 27276 194 27150 195 26594 196 26416 197 25687 198 25235 199 24865 200 24485 201 24007 202 24051 203 23432 204 22806 205 22802 206 22271 207 22124 208 21960 209 21394 210 21450 211 21018 212 20868 213 20596 214 20373 215 19938 216 19465 217 19205 218 19186 219 18675 220 18339 221 18216 222 18081 223 17864 224 17641 225 17440 226 17048 227 16879 228 16820 229 16420 230 16525 231 16172 232 15814 233 15854 234 15465 235 15231 236 15052 237 14829 238 14828 239 14604 240 14498 241 14212 242 13994 243 14002 244 13823 245 13907 246 13519 247 13447 248 13387 249 13114 250 2237472