#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00944/HGDP00944.cram --algo AlignmentStat HGDP/HGDP00944/QCmetrics/HGDP00944.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	387309076	387309076	1.000000	0	387161296	0.999618	57887040232	359535620	53964199734	52333628302	0.000000	0.004782	0.003930	0.000248	151.000000	378100258	0.976596	0	0.495098	0.026918	0.000160	
SECOND_OF_PAIR	387309076	387309076	1.000000	0	378125693	0.976289	55735816170	350433499	51985919174	49317481409	0.000000	0.007559	0.006693	0.000244	151.000000	378100258	0.999933	0	0.495773	0.027771	0.000147	
PAIR	774618152	774618152	1.000000	0	765286989	0.987954	113622856402	709969119	105950118908	101651109711	0.000000	0.006144	0.005286	0.000246	151.000000	756200516	0.988127	0	0.495432	0.027340	0.000153