#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i HGDP/HGDP00944/HGDP00944.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP00944/QCmetrics/HGDP00944.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 33.858 12.216 34 5 0 0.067401 0.010569 0.038158 0.0058314 0.016984 0.13894 0.99702 0.99274 0.98731 0.97651 0.94797 0.86952 0.69935 0.22624 0.030333 0.0086013 0.0059618 0.0045796 0.0036891 0.0030743 0.99506 23 coverage high_quality_coverage_count 0 8200770 1 3631503 2 2897550 3 2646482 4 2571557 5 2591473 6 2701644 7 2881747 8 3162573 9 3572956 10 4116020 11 4810777 12 5697305 13 6825541 14 8235977 15 9994202 16 12205746 17 14992625 18 18462846 19 22776973 20 28064927 21 34453558 22 41976957 23 50647017 24 60424944 25 71109552 26 82326239 27 93811093 28 104986483 29 115402824 30 124541666 31 131929751 32 137201153 33 140104684 34 140448499 35 138258174 36 133641608 37 126886859 38 118428186 39 108635086 40 97958532 41 86875629 42 75831215 43 65124462 44 55053875 45 45851608 46 37645655 47 30471158 48 24340258 49 19203576 50 14983839 51 11564970 52 8859554 53 6744436 54 5123676 55 3901154 56 2980076 57 2304064 58 1807856 59 1448301 60 1188649 61 999751 62 862621 63 762515 64 685314 65 627951 66 581780 67 544601 68 513409 69 486685 70 462932 71 441036 72 420764 73 401873 74 384928 75 366712 76 352230 77 336776 78 322397 79 308432 80 293777 81 281083 82 268909 83 257457 84 247389 85 236509 86 228146 87 219889 88 210660 89 203352 90 196024 91 188968 92 183419 93 177275 94 170883 95 165373 96 159892 97 154595 98 149218 99 143805 100 139538 101 136194 102 131390 103 127831 104 124394 105 120626 106 117160 107 113760 108 110939 109 108259 110 105090 111 102339 112 99879 113 96828 114 94067 115 92655 116 90468 117 87430 118 85425 119 82406 120 81212 121 79418 122 77607 123 75796 124 74250 125 72881 126 70960 127 69862 128 68530 129 67168 130 65942 131 64694 132 63392 133 62468 134 61444 135 59618 136 59151 137 58213 138 57277 139 55845 140 54708 141 53314 142 52795 143 52339 144 50986 145 50332 146 49252 147 48171 148 47637 149 46729 150 46142 151 45496 152 44656 153 44003 154 43417 155 42662 156 41878 157 40974 158 39871 159 39368 160 38620 161 38066 162 37128 163 36486 164 35566 165 34642 166 34508 167 33462 168 33305 169 32200 170 31862 171 31254 172 30881 173 30157 174 29880 175 29485 176 29058 177 28445 178 28092 179 27609 180 27110 181 26922 182 26269 183 26203 184 25736 185 25465 186 25017 187 24416 188 24214 189 23871 190 23069 191 22964 192 22594 193 22194 194 21847 195 21530 196 21133 197 21019 198 20501 199 20512 200 20160 201 19549 202 19279 203 19169 204 18497 205 18457 206 18468 207 17959 208 17919 209 17529 210 17491 211 17432 212 16948 213 16852 214 16618 215 16638 216 16534 217 16335 218 16153 219 15778 220 15730 221 15389 222 15366 223 15014 224 14939 225 14509 226 14509 227 14228 228 14056 229 13898 230 13593 231 13543 232 13505 233 13279 234 13270 235 12836 236 12770 237 12806 238 12780 239 12471 240 12497 241 12691 242 12181 243 12013 244 11891 245 11776 246 11721 247 11580 248 11563 249 11617 250 2125770