#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00945/HGDP00945.cram --algo AlignmentStat HGDP/HGDP00945/QCmetrics/HGDP00945.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	386879660	386879660	1.000000	0	386039148	0.997827	57335035493	359888723	53673587910	51839314344	0.000000	0.004894	0.004217	0.000209	151.000000	380005186	0.984370	0	0.497876	0.019697	0.000056	
SECOND_OF_PAIR	386879660	386879660	1.000000	0	380025830	0.982284	56571881042	354600853	53000712177	50385159261	0.000000	0.006449	0.005780	0.000204	151.000000	380005186	0.999946	0	0.498352	0.020525	0.000051	
PAIR	773759320	773759320	1.000000	0	766064978	0.990056	113906916535	714489576	106674300087	102224473605	0.000000	0.005666	0.004993	0.000206	151.000000	760010372	0.992096	0	0.498112	0.020108	0.000054