#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i HGDP/HGDP00945/HGDP00945.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP00945/QCmetrics/HGDP00945.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 34.199 12.599 34 5 0 0.070252 0.0035713 0.039208 0.006311 0.015575 0.13492 0.99726 0.99359 0.98834 0.9775 0.94957 0.87455 0.71011 0.23767 0.033281 0.0095576 0.0067442 0.0052614 0.0042811 0.0035744 0.99552 23 coverage high_quality_coverage_count 0 7530231 1 2973829 2 2461305 3 2322899 4 2323443 5 2404401 6 2556292 7 2790737 8 3120842 9 3548074 10 4114684 11 4837806 12 5742851 13 6858726 14 8243419 15 9957716 16 12074443 17 14712384 18 17983523 19 22032300 20 26989570 21 32976835 22 40073190 23 48351964 24 57763402 25 68132618 26 79160232 27 90515268 28 101721025 29 112324553 30 121777446 31 129662040 32 135478379 33 138994225 34 139977293 35 138443720 36 134460595 37 128292510 38 120287217 39 110890407 40 100507010 41 89607152 42 78602610 43 67857848 44 57682654 45 48310763 46 39877955 47 32445825 48 26064908 49 20690048 50 16214340 51 12584910 52 9691813 53 7402631 54 5637829 55 4295560 56 3281462 57 2533287 58 1976869 59 1573687 60 1286965 61 1073923 62 921479 63 808905 64 726149 65 663664 66 614841 67 575485 68 543451 69 516245 70 491438 71 470203 72 450220 73 431634 74 412797 75 394767 76 379179 77 362894 78 348313 79 333019 80 321201 81 308723 82 294156 83 281667 84 271411 85 261772 86 251073 87 242648 88 233947 89 227262 90 220669 91 213000 92 206534 93 201084 94 196747 95 191361 96 185531 97 180568 98 175333 99 171158 100 166222 101 162385 102 158432 103 153286 104 148770 105 145050 106 140822 107 136840 108 132745 109 130726 110 126714 111 123310 112 120405 113 116915 114 114151 115 111522 116 108376 117 105793 118 102483 119 99903 120 97301 121 94553 122 92240 123 89904 124 87566 125 85306 126 83500 127 82017 128 79889 129 78484 130 76204 131 74548 132 73257 133 71376 134 70195 135 69271 136 67727 137 65806 138 65418 139 63947 140 63357 141 62466 142 61762 143 59973 144 59034 145 58088 146 56968 147 56018 148 54936 149 54449 150 53864 151 52686 152 51863 153 51153 154 50236 155 49159 156 48292 157 47880 158 46915 159 46073 160 45290 161 44849 162 43851 163 43654 164 42406 165 41629 166 41032 167 40517 168 40065 169 39414 170 38642 171 37956 172 37258 173 36900 174 36570 175 35631 176 35093 177 34574 178 34225 179 33637 180 33172 181 32684 182 32126 183 31434 184 31111 185 30813 186 30339 187 29691 188 29323 189 28735 190 28559 191 28132 192 27571 193 27128 194 26717 195 26574 196 26098 197 25728 198 25454 199 25132 200 24737 201 24519 202 24145 203 23865 204 23603 205 23303 206 22684 207 22508 208 22301 209 22188 210 21958 211 21382 212 21190 213 20939 214 20503 215 20512 216 20119 217 19946 218 19785 219 19418 220 19357 221 19111 222 18574 223 18371 224 18319 225 18103 226 17890 227 17508 228 17635 229 17306 230 17069 231 16865 232 16858 233 16270 234 15949 235 16155 236 15743 237 15562 238 15186 239 15450 240 15006 241 14977 242 14609 243 14513 244 14443 245 14170 246 13935 247 13853 248 13686 249 13437 250 2278653