#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00947/HGDP00947.cram --algo AlignmentStat HGDP/HGDP00947/QCmetrics/HGDP00947.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	385230248	385230248	1.000000	0	384434110	0.997933	57116600328	359189853	53575170555	51788530872	0.000000	0.004909	0.004286	0.000205	151.000000	378413665	0.984339	0	0.498296	0.018094	0.000055	
SECOND_OF_PAIR	385230248	385230248	1.000000	0	378432998	0.982355	56284761651	353861602	52835449323	50135540973	0.000000	0.006422	0.005802	0.000200	151.000000	378413665	0.999949	0	0.498614	0.018912	0.000050	
PAIR	770460496	770460496	1.000000	0	762867108	0.990144	113401361979	713051455	106410619878	101924071845	0.000000	0.005660	0.005038	0.000202	151.000000	756827330	0.992083	0	0.498454	0.018500	0.000053