#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00948/HGDP00948.cram --algo AlignmentStat HGDP/HGDP00948/QCmetrics/HGDP00948.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	376784079	376784079	1.000000	0	376008630	0.997942	55855608702	350668012	52318838348	50516876397	0.000000	0.004783	0.004095	0.000212	151.000000	370537459	0.985449	0	0.498425	0.019927	0.000070	
SECOND_OF_PAIR	376784079	376784079	1.000000	0	370557572	0.983475	55047090727	345758355	51588025898	48951281163	0.000000	0.006522	0.005840	0.000207	151.000000	370537459	0.999946	0	0.498538	0.020810	0.000063	
PAIR	753568158	753568158	1.000000	0	746566202	0.990708	110902699429	696426367	103906864246	99468157560	0.000000	0.005646	0.004961	0.000209	151.000000	741074918	0.992645	0	0.498481	0.020366	0.000066