#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00949/HGDP00949.cram --algo AlignmentStat HGDP/HGDP00949/QCmetrics/HGDP00949.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	410670185	410670185	1.000000	0	410384407	0.999304	61287220620	383560415	57576528563	56315130556	0.000000	0.004844	0.004097	0.000228	151.000000	408189912	0.994653	0	0.499879	0.021963	0.000002	
SECOND_OF_PAIR	410670185	410670185	1.000000	0	408221724	0.994038	59689016398	380424630	56186940271	52597678014	0.000000	0.010668	0.009871	0.000220	151.000000	408189912	0.999922	0	0.499433	0.023726	0.000412	
PAIR	821340370	821340370	1.000000	0	818606131	0.996671	120976237018	763985045	113763468834	108912808570	0.000000	0.007717	0.006949	0.000224	151.000000	816379824	0.997280	0	0.499657	0.022842	0.000207