#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrX.interval_list -i HGDP/HGDP00949/HGDP00949.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP00949/QCmetrics/HGDP00949.WgsMetrics.chrX.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 152114341 14.47 5.1644 14 3 0 0.24468 0.0023322 0.032775 0.0015453 0.00012627 0.28146 0.99837 0.99093 0.88398 0.46873 0.11361 0.017779 0.0053926 0.0021167 0.0010615 0.00064453 0.00043674 0.0003247 0.00025556 0.00020966 0.98921 20 coverage high_quality_coverage_count 0 247316 1 185028 2 206816 3 278070 4 462968 5 851947 6 1573181 7 2756767 8 4455319 9 6630588 10 9052407 11 11411520 12 13347536 13 14539586 14 14814639 15 14173050 16 12831273 17 11011519 18 8982195 19 7021457 20 5249350 21 3781303 22 2621450 23 1762729 24 1161929 25 748911 26 483443 27 309269 28 202986 29 139497 30 102402 31 78262 32 62088 33 51778 34 44387 35 39109 36 35049 37 31602 38 28157 39 25485 40 23789 41 21514 42 19839 43 17799 44 16243 45 14569 46 13600 47 11962 48 11038 49 10156 50 9170 51 8354 52 7678 53 6741 54 6245 55 5575 56 5295 57 5136 58 4849 59 4378 60 4159 61 3941 62 3782 63 3486 64 3256 65 3065 66 2706 67 2569 68 2387 69 2258 70 2118 71 1960 72 1955 73 1859 74 1689 75 1647 76 1544 77 1474 78 1432 79 1365 80 1245 81 1168 82 1112 83 1091 84 1063 85 1096 86 1002 87 940 88 924 89 876 90 761 91 736 92 739 93 776 94 722 95 726 96 671 97 694 98 633 99 523 100 591 101 538 102 530 103 460 104 509 105 487 106 483 107 491 108 482 109 521 110 529 111 448 112 408 113 378 114 402 115 411 116 428 117 429 118 376 119 416 120 358 121 350 122 357 123 351 124 368 125 346 126 345 127 328 128 318 129 298 130 308 131 312 132 287 133 233 134 271 135 252 136 261 137 244 138 231 139 277 140 282 141 244 142 284 143 256 144 249 145 231 146 209 147 225 148 220 149 223 150 209 151 197 152 187 153 182 154 185 155 175 156 178 157 178 158 175 159 139 160 156 161 170 162 163 163 123 164 156 165 156 166 143 167 162 168 165 169 167 170 141 171 182 172 145 173 186 174 157 175 169 176 173 177 161 178 169 179 146 180 150 181 126 182 156 183 133 184 164 185 177 186 147 187 171 188 137 189 170 190 164 191 132 192 153 193 138 194 128 195 126 196 121 197 118 198 114 199 112 200 111 201 101 202 98 203 79 204 85 205 84 206 73 207 68 208 74 209 65 210 62 211 68 212 51 213 57 214 58 215 58 216 56 217 62 218 61 219 60 220 59 221 66 222 73 223 60 224 45 225 45 226 55 227 50 228 57 229 61 230 52 231 53 232 56 233 44 234 51 235 42 236 41 237 35 238 40 239 49 240 49 241 36 242 49 243 40 244 33 245 47 246 52 247 50 248 36 249 37 250 3332