#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00952/HGDP00952.cram --algo AlignmentStat HGDP/HGDP00952/QCmetrics/HGDP00952.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	422674740	422674740	1.000000	0	422383308	0.999311	63004211454	395367415	59270153840	57539529143	0.000000	0.005635	0.004921	0.000226	151.000000	420814789	0.996287	0	0.499803	0.021364	0.000001	
SECOND_OF_PAIR	422674740	422674740	1.000000	0	420848558	0.995679	61480875101	392937320	57964220163	53863294028	0.000000	0.011009	0.010264	0.000215	151.000000	420814789	0.999920	0	0.499650	0.023038	0.000404	
PAIR	845349480	845349480	1.000000	0	843231866	0.997495	124485086555	788304735	117234374003	111402823171	0.000000	0.008289	0.007562	0.000221	151.000000	841629578	0.998100	0	0.499727	0.022200	0.000202