#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00962/HGDP00962.cram --algo AlignmentStat HGDP/HGDP00962/QCmetrics/HGDP00962.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	425727020	425727020	1.000000	0	425377799	0.999180	63391117979	395558030	59261110543	57790700091	0.000000	0.005336	0.004564	0.000228	151.000000	423078499	0.994595	0	0.499821	0.021733	0.000002	
SECOND_OF_PAIR	425727020	425727020	1.000000	0	423115943	0.993867	61624037281	392410608	57735490120	53618345332	0.000000	0.011670	0.010870	0.000219	151.000000	423078499	0.999912	0	0.499649	0.023495	0.000483	
PAIR	851454040	851454040	1.000000	0	848493742	0.996523	125015155260	787968638	116996600663	111409045423	0.000000	0.008458	0.007676	0.000224	151.000000	846156998	0.997246	0	0.499735	0.022612	0.000242