#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00963/HGDP00963.cram --algo AlignmentStat HGDP/HGDP00963/QCmetrics/HGDP00963.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	429271061	429271061	1.000000	0	428661963	0.998581	64041730301	401626133	60300697895	59088351935	0.000000	0.004530	0.003870	0.000224	151.000000	425827522	0.993388	0	0.499952	0.020436	0.000003	
SECOND_OF_PAIR	429271061	429271061	1.000000	0	425868697	0.992074	62185566610	397922420	58672346051	54726102400	0.000000	0.011319	0.010640	0.000213	151.000000	425827522	0.999903	0	0.499579	0.022038	0.001086	
PAIR	858542122	858542122	1.000000	0	854530660	0.995328	126227296911	799548553	118973043946	113814454335	0.000000	0.007875	0.007208	0.000219	151.000000	851655044	0.996635	0	0.499766	0.021234	0.000545