#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00964/HGDP00964.cram --algo AlignmentStat HGDP/HGDP00964/QCmetrics/HGDP00964.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	415048406	415048406	1.000000	0	414745747	0.999271	61444145992	386372279	57577628141	55599280634	0.000000	0.006342	0.005576	0.000239	151.000000	413440674	0.996853	0	0.499935	0.023049	0.000002	
SECOND_OF_PAIR	415048406	415048406	1.000000	0	413479799	0.996221	60109755720	384297956	56471094979	52489967570	0.000000	0.011193	0.010394	0.000226	151.000000	413440674	0.999905	0	0.499553	0.025328	0.000400	
PAIR	830096812	830096812	1.000000	0	828225546	0.997746	121553901712	770670235	114048723120	108089248204	0.000000	0.008740	0.007962	0.000232	151.000000	826881348	0.998377	0	0.499744	0.024187	0.000201