#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00965/HGDP00965.cram --algo AlignmentStat HGDP/HGDP00965/QCmetrics/HGDP00965.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	397104718	397104718	1.000000	0	396700351	0.998982	59191525010	369331965	55410188639	54183160420	0.000000	0.005425	0.004639	0.000228	151.000000	395265482	0.996383	0	0.499898	0.021446	0.000004	
SECOND_OF_PAIR	397104718	397104718	1.000000	0	395295432	0.995444	57836658592	367170940	54281882003	50884091006	0.000000	0.010719	0.009896	0.000216	151.000000	395265482	0.999924	0	0.499655	0.023022	0.000760	
PAIR	794209436	794209436	1.000000	0	791995783	0.997213	117028183602	736502905	109692070642	105067251426	0.000000	0.008041	0.007240	0.000222	151.000000	790530964	0.998150	0	0.499777	0.022232	0.000382