#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00967/HGDP00967.cram --algo AlignmentStat HGDP/HGDP00967/QCmetrics/HGDP00967.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	422024606	422024606	1.000000	0	421592758	0.998977	63021184874	396028142	59448148085	58143613554	0.000000	0.004663	0.004057	0.000219	151.000000	419584334	0.995236	0	0.499905	0.019087	0.000003	
SECOND_OF_PAIR	422024606	422024606	1.000000	0	419620175	0.994303	61543913795	393116612	58156947954	54737173496	0.000000	0.009818	0.009153	0.000212	151.000000	419584334	0.999915	0	0.499487	0.020970	0.000739	
PAIR	844049212	844049212	1.000000	0	841212933	0.996640	124565098669	789144754	117605096039	112880787050	0.000000	0.007210	0.006577	0.000216	151.000000	839168668	0.997570	0	0.499697	0.020026	0.000371