#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00969/HGDP00969.cram --algo AlignmentStat HGDP/HGDP00969/QCmetrics/HGDP00969.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	428880433	428880433	1.000000	0	428646239	0.999454	63971719113	400926654	60103226603	58370811745	0.000000	0.005522	0.004857	0.000218	151.000000	427060866	0.996301	0	0.499870	0.019740	0.000001	
SECOND_OF_PAIR	428880433	428880433	1.000000	0	427093596	0.995834	62493883876	398505494	58846140978	54836621357	0.000000	0.010634	0.009908	0.000209	151.000000	427060866	0.999923	0	0.499603	0.021483	0.000258	
PAIR	857760866	857760866	1.000000	0	855739835	0.997644	126465602989	799432148	118949367581	113207433102	0.000000	0.008048	0.007356	0.000214	151.000000	854121732	0.998109	0	0.499737	0.020610	0.000130