#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrX.interval_list -i HGDP/HGDP00969/HGDP00969.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP00969/QCmetrics/HGDP00969.WgsMetrics.chrX.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 152114341 13.825 4.6974 14 3 0 0.30535 0.0017098 0.034071 0.0017169 7.7448e-05 0.34292 0.99809 0.98827 0.85585 0.41059 0.086304 0.012537 0.0039031 0.0014611 0.00067451 0.00036927 0.00023941 0.00016447 0.0001172 8.7704e-05 0.98657 19 coverage high_quality_coverage_count 0 290456 1 230325 2 265237 3 376240 4 621285 5 1129423 6 2056525 7 3506991 8 5513977 9 7936445 10 10493514 11 12791628 12 14430837 13 15139324 14 14874759 15 13746673 16 11992589 17 9924163 18 7801596 19 5864262 20 4217275 21 2931287 22 1966154 23 1282953 24 823308 25 522411 26 331923 27 215255 28 143591 29 100216 30 74550 31 56931 32 46294 33 39031 34 33413 35 29554 36 26413 37 23966 38 21864 39 19443 40 17396 41 15746 42 14225 43 13369 44 12102 45 11070 46 10059 47 9294 48 8603 49 7794 50 7059 51 6488 52 5785 53 5268 54 4608 55 4259 56 3720 57 3349 58 3001 59 2893 60 2818 61 2489 62 2349 63 2236 64 1976 65 1734 66 1620 67 1576 68 1484 69 1473 70 1380 71 1368 72 1262 73 1198 74 1128 75 1076 76 1047 77 1058 78 939 79 942 80 901 81 814 82 802 83 789 84 714 85 669 86 683 87 595 88 617 89 607 90 577 91 543 92 539 93 475 94 484 95 457 96 366 97 365 98 339 99 342 100 331 101 318 102 305 103 296 104 274 105 293 106 275 107 283 108 283 109 278 110 272 111 266 112 275 113 256 114 269 115 239 116 205 117 175 118 208 119 186 120 171 121 170 122 179 123 167 124 152 125 167 126 144 127 152 128 146 129 147 130 146 131 144 132 125 133 147 134 126 135 144 136 89 137 103 138 117 139 96 140 93 141 94 142 94 143 64 144 86 145 82 146 67 147 65 148 59 149 47 150 57 151 57 152 77 153 51 154 56 155 49 156 74 157 61 158 59 159 60 160 76 161 56 162 49 163 47 164 56 165 56 166 45 167 43 168 42 169 43 170 29 171 25 172 30 173 38 174 34 175 39 176 46 177 53 178 42 179 40 180 42 181 53 182 43 183 58 184 63 185 60 186 42 187 48 188 44 189 39 190 33 191 41 192 38 193 50 194 38 195 31 196 25 197 30 198 40 199 23 200 18 201 26 202 19 203 22 204 17 205 27 206 15 207 14 208 17 209 17 210 12 211 22 212 9 213 22 214 21 215 15 216 20 217 14 218 10 219 12 220 9 221 10 222 14 223 7 224 9 225 4 226 10 227 11 228 12 229 12 230 9 231 8 232 20 233 10 234 11 235 11 236 9 237 12 238 7 239 8 240 8 241 6 242 7 243 9 244 5 245 10 246 13 247 12 248 2 249 5 250 1511