#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00972/HGDP00972.cram --algo AlignmentStat HGDP/HGDP00972/QCmetrics/HGDP00972.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	391940715	391940715	1.000000	0	390720604	0.996887	58380028819	366641817	55070231047	54002398203	0.000000	0.004740	0.004081	0.000224	151.000000	389643031	0.997242	0	0.499996	0.019523	0.000004	
SECOND_OF_PAIR	391940715	391940715	1.000000	0	389689222	0.994256	57364413607	364864104	54214340444	51385224772	0.000000	0.009201	0.008502	0.000213	151.000000	389643031	0.999881	0	0.499482	0.021006	0.001104	
PAIR	783881430	783881430	1.000000	0	780409826	0.995571	115744442426	731505921	109284571491	105387622975	0.000000	0.006951	0.006274	0.000218	151.000000	779286062	0.998560	0	0.499739	0.020263	0.000554