#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i HGDP/HGDP00972/HGDP00972.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP00972/QCmetrics/HGDP00972.WgsMetrics.chrY.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 23636355 2.1085 16.46 0 0 0 0.063873 0.0052463 0.090269 0.041893 0.40786 0.60914 0.18599 0.043616 0.027503 0.021018 0.017297 0.014894 0.013263 0.011131 0.0097686 0.0088258 0.0080604 0.0073711 0.0066911 0.0060209 0.10967 1 coverage high_quality_coverage_count 0 19240200 1 2501257 2 469453 3 234167 4 160355 5 116139 6 90763 7 70046 8 56947 9 46950 10 39527 11 33787 12 29294 13 26751 14 23931 15 21124 16 18502 17 17543 18 16047 19 14735 20 13068 21 12329 22 11126 23 10706 24 9570 25 8960 26 8109 27 7551 28 7105 29 6822 30 6420 31 6009 32 5832 33 5298 34 4871 35 4789 36 4650 37 4419 38 4218 39 3885 40 3734 41 3632 42 3446 43 3360 44 3260 45 3207 46 2972 47 2971 48 2879 49 2746 50 2648 51 2536 52 2343 53 2301 54 2293 55 2077 56 2076 57 2055 58 2011 59 1943 60 1921 61 1945 62 1872 63 1821 64 1881 65 1821 66 1743 67 1683 68 1711 69 1694 70 1665 71 1699 72 1623 73 1630 74 1704 75 1652 76 1608 77 1570 78 1564 79 1578 80 1595 81 1584 82 1634 83 1553 84 1617 85 1620 86 1598 87 1610 88 1596 89 1664 90 1645 91 1698 92 1642 93 1622 94 1639 95 1562 96 1586 97 1519 98 1489 99 1439 100 1419 101 1366 102 1372 103 1359 104 1313 105 1246 106 1236 107 1234 108 1248 109 1183 110 1184 111 1172 112 1076 113 1113 114 1068 115 1104 116 1068 117 1065 118 1021 119 1036 120 1000 121 963 122 899 123 903 124 861 125 839 126 839 127 802 128 816 129 847 130 862 131 896 132 899 133 908 134 948 135 935 136 850 137 861 138 927 139 857 140 869 141 794 142 833 143 797 144 787 145 800 146 814 147 720 148 773 149 708 150 598 151 629 152 595 153 606 154 550 155 541 156 525 157 502 158 446 159 470 160 457 161 440 162 416 163 398 164 437 165 379 166 369 167 350 168 394 169 384 170 353 171 364 172 384 173 343 174 373 175 348 176 349 177 330 178 332 179 299 180 322 181 331 182 335 183 332 184 311 185 323 186 329 187 309 188 306 189 320 190 284 191 302 192 275 193 283 194 281 195 271 196 279 197 309 198 244 199 285 200 274 201 270 202 254 203 285 204 274 205 271 206 279 207 283 208 293 209 278 210 286 211 255 212 278 213 284 214 264 215 239 216 243 217 228 218 224 219 252 220 229 221 246 222 260 223 246 224 208 225 246 226 206 227 226 228 221 229 227 230 228 231 227 232 197 233 215 234 215 235 185 236 220 237 211 238 208 239 192 240 207 241 205 242 194 243 235 244 208 245 225 246 207 247 210 248 196 249 212 250 62005