#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00973/HGDP00973.cram --algo AlignmentStat HGDP/HGDP00973/QCmetrics/HGDP00973.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	454977707	454977707	1.000000	0	454548023	0.999056	67931526279	424222256	63710949952	62495205821	0.000000	0.004766	0.004007	0.000224	151.000000	453194625	0.997023	0	0.499902	0.020562	0.000002	
SECOND_OF_PAIR	454977707	454977707	1.000000	0	453229506	0.996158	66642757986	421993699	62620573954	59165815936	0.000000	0.009802	0.008981	0.000213	151.000000	453194625	0.999923	0	0.499583	0.022104	0.000712	
PAIR	909955414	909955414	1.000000	0	907777529	0.997607	134574284265	846215955	126331523906	121661021757	0.000000	0.007260	0.006472	0.000219	151.000000	906389250	0.998471	0	0.499743	0.021332	0.000357