#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00974/HGDP00974.cram --algo AlignmentStat HGDP/HGDP00974/QCmetrics/HGDP00974.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	451840750	451840750	1.000000	0	449974420	0.995869	67248293778	423159217	63535057293	62266987309	0.000000	0.004702	0.004115	0.000218	151.000000	448512231	0.996751	0	0.500031	0.018719	0.000005	
SECOND_OF_PAIR	451840750	451840750	1.000000	0	448576430	0.992776	65916432127	420802112	62382538170	58733536820	0.000000	0.010176	0.009541	0.000208	151.000000	448512231	0.999857	0	0.499464	0.020211	0.003761	
PAIR	903681500	903681500	1.000000	0	898550850	0.994323	133164725905	843961329	125917595463	121000524129	0.000000	0.007411	0.006803	0.000213	151.000000	897024462	0.998301	0	0.499748	0.019464	0.001883