#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00975/HGDP00975.cram --algo AlignmentStat HGDP/HGDP00975/QCmetrics/HGDP00975.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	431864006	431864006	1.000000	0	431062477	0.998144	64396683086	404441614	60728068804	59498303986	0.000000	0.004633	0.003995	0.000219	151.000000	429683024	0.996800	0	0.499972	0.018651	0.000004	
SECOND_OF_PAIR	431864006	431864006	1.000000	0	429726870	0.995051	63060065469	402257193	59581760963	56119440044	0.000000	0.009952	0.009279	0.000210	151.000000	429683024	0.999898	0	0.499579	0.020243	0.001556	
PAIR	863728012	863728012	1.000000	0	860789347	0.996598	127456748555	806698807	120309829767	115617744030	0.000000	0.007265	0.006612	0.000214	151.000000	859366048	0.998347	0	0.499776	0.019446	0.000780