#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i HGDP/HGDP00975/HGDP00975.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP00975/QCmetrics/HGDP00975.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 33.214 11.444 33 4 0 0.18426 0.0015386 0.034037 0.0036986 0.01413 0.23766 0.99863 0.99599 0.99305 0.98833 0.9722 0.89731 0.68756 0.15361 0.017717 0.0084824 0.0062115 0.0048113 0.0038836 0.0032387 0.99755 26 coverage high_quality_coverage_count 0 3766548 1 2184248 2 1804136 3 1672165 4 1597367 5 1562167 6 1555936 7 1580924 8 1642952 9 1744382 10 1900796 11 2135700 12 2459208 13 2917850 14 3547022 15 4479099 16 5862027 17 7900948 18 10913154 19 15173336 20 21062986 21 28920122 22 38936634 23 51225769 24 65635930 25 81775135 26 98917254 27 116176655 28 132555531 29 146967704 30 158395313 31 166116183 32 169642999 33 168807127 34 163757060 35 155006594 36 143247082 37 129371498 38 114246674 39 98696359 40 83543206 41 69289734 42 56387647 43 45010460 44 35342032 45 27279929 46 20756133 47 15601905 48 11615237 49 8594134 50 6348938 51 4706280 52 3511853 53 2665792 54 2074136 55 1652878 56 1358412 57 1153894 58 1005100 59 897873 60 818133 61 754011 62 702672 63 658972 64 622556 65 590740 66 561971 67 533805 68 509178 69 488093 70 464741 71 445000 72 425756 73 407285 74 388563 75 372561 76 357457 77 341781 78 328552 79 316094 80 302951 81 291719 82 279888 83 268233 84 258772 85 247432 86 237978 87 228908 88 220383 89 213062 90 204841 91 198101 92 190905 93 185001 94 178633 95 173369 96 167844 97 162695 98 158023 99 152679 100 147534 101 143746 102 140178 103 136238 104 132028 105 128753 106 125409 107 121484 108 118295 109 115110 110 111440 111 107869 112 105561 113 102129 114 99479 115 97481 116 94805 117 92254 118 90288 119 87518 120 85453 121 83047 122 80980 123 78723 124 77010 125 75191 126 73564 127 72043 128 69633 129 68466 130 67412 131 65567 132 64832 133 63273 134 61736 135 60878 136 59506 137 58276 138 57307 139 56168 140 55531 141 54007 142 53338 143 51964 144 51323 145 50229 146 49341 147 49123 148 47928 149 47195 150 46381 151 45508 152 45108 153 44120 154 43332 155 42906 156 42059 157 41590 158 40848 159 39892 160 39916 161 39484 162 38450 163 37894 164 37807 165 37100 166 36547 167 35861 168 35854 169 35313 170 34318 171 34175 172 33256 173 33216 174 32697 175 31948 176 31735 177 31108 178 30726 179 30069 180 29407 181 28890 182 28885 183 28398 184 28031 185 27585 186 27170 187 26970 188 26361 189 26403 190 26384 191 25709 192 25467 193 25014 194 24793 195 24565 196 24362 197 24035 198 23553 199 23206 200 23148 201 22817 202 22272 203 22028 204 21873 205 21626 206 21455 207 21111 208 20848 209 20764 210 20322 211 20273 212 19986 213 19695 214 19502 215 19269 216 19066 217 18847 218 18526 219 18028 220 18125 221 17603 222 17427 223 17060 224 16940 225 16739 226 16473 227 16276 228 16287 229 15957 230 15953 231 15564 232 15508 233 15204 234 14889 235 14833 236 14851 237 14645 238 14252 239 14310 240 14136 241 14006 242 13784 243 13956 244 13789 245 13715 246 13518 247 13258 248 13169 249 12974 250 2192193