#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00976/HGDP00976.cram --algo AlignmentStat HGDP/HGDP00976/QCmetrics/HGDP00976.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	376238755	376238755	1.000000	0	375550996	0.998172	56127126554	353000565	53001529082	51963737992	0.000000	0.004534	0.003943	0.000215	151.000000	374301163	0.996672	0	0.499926	0.018402	0.000008	
SECOND_OF_PAIR	376238755	376238755	1.000000	0	374339278	0.994951	55004152930	351048739	52035136829	49027161279	0.000000	0.009986	0.009344	0.000207	151.000000	374301163	0.999898	0	0.499634	0.019896	0.001486	
PAIR	752477510	752477510	1.000000	0	749890274	0.996562	111131279484	704049304	105036665911	100990899271	0.000000	0.007232	0.006618	0.000211	151.000000	748602326	0.998282	0	0.499780	0.019148	0.000747