#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00977/HGDP00977.cram --algo AlignmentStat HGDP/HGDP00977/QCmetrics/HGDP00977.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	439263579	439263579	1.000000	0	439020289	0.999446	65620005349	409988373	61615783101	60589005419	0.000000	0.004461	0.003737	0.000226	151.000000	437913898	0.997480	0	0.499917	0.020614	0.000001	
SECOND_OF_PAIR	439263579	439263579	1.000000	0	437945416	0.996999	64515998043	408130023	60698927976	57776051436	0.000000	0.009139	0.008375	0.000215	151.000000	437913898	0.999928	0	0.499593	0.021956	0.000333	
PAIR	878527158	878527158	1.000000	0	876965705	0.998223	130136003392	818118396	122314711077	118365056855	0.000000	0.006780	0.006039	0.000221	151.000000	875827796	0.998702	0	0.499755	0.021285	0.000167