#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00983/HGDP00983.cram --algo AlignmentStat HGDP/HGDP00983/QCmetrics/HGDP00983.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	380400608	380400608	1.000000	0	380031505	0.999030	56658445046	353514036	52920153047	50950418888	0.000000	0.005397	0.004635	0.000248	151.000000	377434370	0.993166	0	0.496015	0.024301	0.000163	
SECOND_OF_PAIR	380400608	380400608	1.000000	0	377457101	0.992262	56078237065	351246086	52421176938	49330477687	0.000000	0.007439	0.006703	0.000239	151.000000	377434370	0.999940	0	0.496781	0.024942	0.000156	
PAIR	760801216	760801216	1.000000	0	757488606	0.995646	112736682111	704760122	105341329985	100280896575	0.000000	0.006412	0.005664	0.000244	151.000000	754868740	0.996541	0	0.496397	0.024621	0.000159