#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00985/HGDP00985.cram --algo AlignmentStat HGDP/HGDP00985/QCmetrics/HGDP00985.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	338531713	338531713	1.000000	0	337614951	0.997292	50335419304	316171555	47330833751	45656341508	0.000000	0.005223	0.004528	0.000242	151.000000	333401741	0.987521	0	0.499220	0.019754	0.001979	
SECOND_OF_PAIR	338531713	338531713	1.000000	0	333463433	0.985029	49191378805	311707298	46253544532	43556537005	0.000000	0.008449	0.007761	0.000237	151.000000	333401741	0.999815	0	0.499126	0.020403	0.001851	
PAIR	677063426	677063426	1.000000	0	671078384	0.991160	99526798109	627878853	93584378283	89212878513	0.000000	0.006817	0.006126	0.000239	151.000000	666803482	0.993630	0	0.499173	0.020077	0.001915