#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00992/HGDP00992.cram --algo AlignmentStat HGDP/HGDP00992/QCmetrics/HGDP00992.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	402034984	402034984	1.000000	0	401807049	0.999433	59910027439	372728154	55821781827	53534457790	0.000000	0.005984	0.005171	0.000251	151.000000	399487941	0.994228	0	0.499194	0.022592	0.000264	
SECOND_OF_PAIR	402034984	402034984	1.000000	0	399525907	0.993759	58436075810	370001531	54445749346	49568132304	1.000000	0.011359	0.010597	0.000247	151.000000	399487941	0.999905	0	0.498937	0.023265	0.000243	
PAIR	804069968	804069968	1.000000	0	801332956	0.996596	118346103249	742729685	110267531173	103102590094	0.000000	0.008638	0.007850	0.000249	151.000000	798975882	0.997059	0	0.499066	0.022927	0.000254