#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01006/HGDP01006.cram --algo AlignmentStat HGDP/HGDP01006/QCmetrics/HGDP01006.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	470960368	470960368	1.000000	0	470578251	0.999189	70363938568	443339620	66578399811	65033812078	0.000000	0.004741	0.004119	0.000216	151.000000	468442506	0.995461	0	0.500136	0.018893	0.000001	
SECOND_OF_PAIR	470960368	470960368	1.000000	0	468476568	0.994726	68780697372	440263868	65174639806	61120674845	0.000000	0.010419	0.009771	0.000206	151.000000	468442506	0.999927	0	0.499344	0.020225	0.000648	
PAIR	941920736	941920736	1.000000	0	939054819	0.996957	139144635940	883603488	131753039617	126154486923	0.000000	0.007547	0.006915	0.000211	151.000000	936885012	0.997689	0	0.499741	0.019557	0.000325