#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrX.interval_list -i HGDP/HGDP01006/HGDP01006.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP01006/QCmetrics/HGDP01006.WgsMetrics.chrX.txt
GENOME_TERRITORY	MEAN_COVERAGE	SD_COVERAGE	MEDIAN_COVERAGE	MAD_COVERAGE	PCT_EXC_MAPQ	PCT_EXC_DUPE	PCT_EXC_UNPAIRED	PCT_EXC_BASEQ	PCT_EXC_OVERLAP	PCT_EXC_CAPPED	PCT_EXC_TOTAL	PCT_1X	PCT_5X	PCT_10X	PCT_15X	PCT_20X	PCT_25X	PCT_30X	PCT_40X	PCT_50X	PCT_60X	PCT_70X	PCT_80X	PCT_90X	PCT_100X	HET_SNP_SENSITIVITY	HET_SNP_Q	
152114341	37.573	10.732	38	6	0	0.10956	0.0020915	0.037541	0.0027834	0.00061114	0.15259	0.99916	0.99716	0.9943	0.98591	0.95811	0.90727	0.82496	0.42418	0.074343	0.011105	0.0055764	0.0037121	0.0025733	0.001846	0.9983	28	

coverage	high_quality_coverage_count	
0	128415
1	85889
2	76361
3	71745
4	69591
5	71653
6	75445
7	82733
8	93734
9	111353
10	138960
11	177707
12	232363
13	311753
14	414920
15	539797
16	685042
17	841881
18	1004491
19	1157762
20	1301265
21	1428703
22	1546578
23	1664561
24	1792214
25	1950478
26	2160095
27	2431965
28	2773666
29	3204829
30	3709495
31	4283126
32	4904044
33	5528397
34	6124358
35	6655622
36	7097790
37	7428021
38	7600277
39	7633697
40	7502309
41	7229576
42	6831811
43	6337289
44	5762268
45	5141514
46	4509781
47	3881691
48	3285624
49	2733029
50	2238020
51	1809233
52	1438596
53	1130631
54	878575
55	677380
56	519380
57	394809
58	301541
59	231291
60	177103
61	138556
62	111108
63	89159
64	74752
65	63243
66	54846
67	48399
68	43886
69	39918
70	37129
71	34155
72	32030
73	30165
74	28644
75	26835
76	25439
77	24247
78	22783
79	22154
80	20935
81	20250
82	19341
83	18233
84	17724
85	16836
86	15931
87	15492
88	14488
89	13994
90	13356
91	12842
92	12318
93	11612
94	10968
95	10697
96	10379
97	9887
98	9414
99	9170
100	8713
101	8459
102	8157
103	7846
104	7327
105	6889
106	6718
107	6516
108	6400
109	6089
110	5802
111	5565
112	5418
113	5216
114	4868
115	4801
116	4542
117	4299
118	4066
119	3930
120	3799
121	3625
122	3442
123	3427
124	3299
125	3108
126	3115
127	2987
128	2982
129	2828
130	2759
131	2697
132	2655
133	2496
134	2473
135	2346
136	2298
137	2160
138	2048
139	1898
140	1799
141	1906
142	1787
143	1705
144	1733
145	1619
146	1638
147	1579
148	1517
149	1490
150	1462
151	1401
152	1347
153	1270
154	1304
155	1358
156	1354
157	1317
158	1196
159	1202
160	1238
161	1077
162	1147
163	1118
164	1120
165	1031
166	1014
167	949
168	1001
169	976
170	873
171	853
172	922
173	889
174	837
175	808
176	746
177	757
178	745
179	705
180	712
181	709
182	681
183	686
184	624
185	648
186	620
187	641
188	625
189	632
190	609
191	550
192	537
193	578
194	533
195	512
196	525
197	469
198	601
199	516
200	475
201	507
202	466
203	504
204	488
205	502
206	455
207	473
208	456
209	458
210	461
211	450
212	408
213	443
214	431
215	463
216	407
217	414
218	448
219	467
220	420
221	434
222	415
223	405
224	326
225	430
226	377
227	349
228	384
229	366
230	338
231	347
232	358
233	290
234	293
235	322
236	311
237	273
238	307
239	264
240	285
241	259
242	250
243	249
244	253
245	264
246	248
247	259
248	244
249	211
250	23231