#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01009/HGDP01009.cram --algo AlignmentStat HGDP/HGDP01009/QCmetrics/HGDP01009.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	398579580	398579580	1.000000	0	398415134	0.999587	59583149445	373325661	56024948916	54546854806	0.000000	0.004193	0.003517	0.000222	151.000000	398065301	0.999122	0	0.499285	0.018843	0.000082	
SECOND_OF_PAIR	398579580	398579580	1.000000	0	398086336	0.998762	59316183709	372760964	55765975225	53528827076	0.000000	0.005373	0.004696	0.000227	151.000000	398065301	0.999947	0	0.499312	0.019056	0.000078	
PAIR	797159160	797159160	1.000000	0	796501470	0.999175	118899333154	746086625	111790924141	108075681882	0.000000	0.004781	0.004105	0.000225	151.000000	796130602	0.999534	0	0.499299	0.018950	0.000080