#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01010/HGDP01010.cram --algo AlignmentStat HGDP/HGDP01010/QCmetrics/HGDP01010.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	457662463	457662463	1.000000	0	457440229	0.999514	68388583973	430387702	64640881514	63162300780	0.000000	0.004670	0.004006	0.000223	151.000000	455566973	0.995905	0	0.500064	0.020759	0.000001	
SECOND_OF_PAIR	457662463	457662463	1.000000	0	455597292	0.995488	66902884787	427614518	63320065964	59470612448	0.000000	0.009926	0.009243	0.000214	151.000000	455566973	0.999933	0	0.499439	0.022003	0.000334	
PAIR	915324926	915324926	1.000000	0	913037521	0.997501	135291468760	858002220	127960947478	122632913228	0.000000	0.007269	0.006598	0.000218	151.000000	911133946	0.997915	0	0.499752	0.021380	0.000168