#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01013/HGDP01013.cram --algo AlignmentStat HGDP/HGDP01013/QCmetrics/HGDP01013.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	409157859	409157859	1.000000	0	409018754	0.999660	61203248927	383092672	57508959056	56133619470	0.000000	0.003992	0.003343	0.000219	151.000000	408618827	0.999022	0	0.499353	0.017987	0.000046	
SECOND_OF_PAIR	409157859	409157859	1.000000	0	408638145	0.998730	60896897217	382522382	57217425132	55112811821	0.000000	0.005184	0.004536	0.000225	151.000000	408618827	0.999953	0	0.499289	0.018194	0.000043	
PAIR	818315718	818315718	1.000000	0	817656899	0.999195	122100146144	765615054	114726384188	111246431291	0.000000	0.004586	0.003938	0.000222	151.000000	817237654	0.999487	0	0.499321	0.018091	0.000044