#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01014/HGDP01014.cram --algo AlignmentStat HGDP/HGDP01014/QCmetrics/HGDP01014.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	451249223	451249223	1.000000	0	450366679	0.998044	67345556102	422013062	63390378538	62069124773	0.000000	0.004547	0.003882	0.000221	151.000000	448519380	0.995898	0	0.500004	0.019636	0.000007	
SECOND_OF_PAIR	451249223	451249223	1.000000	0	448578712	0.994082	65953177943	419446360	62170554650	58709128294	0.000000	0.009627	0.008931	0.000214	151.000000	448519380	0.999868	0	0.499491	0.021192	0.001700	
PAIR	902498446	902498446	1.000000	0	898945391	0.996063	133298734045	841459422	125560933188	120778253067	0.000000	0.007060	0.006382	0.000218	151.000000	897038760	0.997879	0	0.499748	0.020413	0.000853