#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01019/HGDP01019.cram --algo AlignmentStat HGDP/HGDP01019/QCmetrics/HGDP01019.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	441138700	441138700	1.000000	0	440919299	0.999503	65925571993	413110728	62065617041	60668666187	0.000000	0.004797	0.004091	0.000218	151.000000	438279255	0.994012	0	0.500003	0.020235	0.000002	
SECOND_OF_PAIR	441138700	441138700	1.000000	0	438307359	0.993582	64279317953	409553995	60616256198	56887609949	0.000000	0.010621	0.009885	0.000209	151.000000	438279255	0.999936	0	0.499507	0.021620	0.000334	
PAIR	882277400	882277400	1.000000	0	879226658	0.996542	130204889946	822664723	122681873239	117556276136	0.000000	0.007672	0.006953	0.000213	151.000000	876558510	0.996965	0	0.499756	0.020925	0.000168