#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01021/HGDP01021.cram --algo AlignmentStat HGDP/HGDP01021/QCmetrics/HGDP01021.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	406068251	406068251	1.000000	0	405727696	0.999161	60674925389	380850008	57226513840	56140105386	0.000000	0.004699	0.004063	0.000219	151.000000	404588108	0.997191	0	0.499926	0.018107	0.000002	
SECOND_OF_PAIR	406068251	406068251	1.000000	0	404616359	0.996425	59552201444	378979543	56275116225	53146535578	0.000000	0.010150	0.009475	0.000208	151.000000	404588108	0.999930	0	0.499628	0.019482	0.000633	
PAIR	812136502	812136502	1.000000	0	810344055	0.997793	120227126833	759829551	113501630065	109286640964	0.000000	0.007399	0.006746	0.000214	151.000000	809176216	0.998559	0	0.499777	0.018794	0.000318